| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Mrudula (NCBS, India) | Basic elements of genetics and evolution: Genes, genomes, central dogma, polymorphism, genotype-phenotype correlation, inheritance | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Archana (JNCASR, India) | (Basic Math lecture): calculus, vectors/matrices, probabiity distributions | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Deepa Agashe (NCBS, India) | Problem set: Mendelian genetics, selection, mutations | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Archana (JNCASR, India) | Basic Math tutorial | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | Deepa Agashe (NCBS, India) | Journal club: Discuss Rainey and Travisano 1998 |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Vishwesha Guttal (IISc, India) | Process of model building. Discrete-time population dynamical models: density-dependent and density-independent growth | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Uma Ramakrishnan (NCBS, India) | Hardy-Weinberg equilibirum; estimating allele frequencies | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Vishwesha Guttal (IISc, India) | Discrete-time logistic population model; linear stability analysis | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Uma Ramakrishnan (NCBS, India) | Basics of drift and migration. sampling and allele freq; Fst and wahlund effect | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | Sumithra (IISc, India) | Computer simulations of logistic population model. Discuss May 1976 |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Vishwesha Guttal (IISc, India) | Discuss the proess of model building, purpose of models in light of results of logistic model. Introduce continuous time models | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Deepa Agashe (NCBS, India) | Processes generating variation: Mutations, mutation rate, recombination, plasticity | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Vishwesha Guttal (IISc, India) | Game theory: hawk-dove games, selfishness and cooperation | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Deepa Agashe (NCBS, India) | Problem set: Measuring variation, experimental and bioinformatics approaches | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | -- | Free time |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Vishwesha Guttal (IISc, India) | Game theory: evolution of cooperation | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Kavita Jain (JNCASR, India) | Basic evol forces; Random genetic drift; Fixation probability; Neutral coalescent | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Vishwesha Guttal (IISc, India) | Game theory: exercises | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Kavita Jain (JNCASR, India) | Problem set: Deterministic models | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | Kavita Jain (JNCASR, India) | Journal club: Discuss Luria & Delbruck 1943, Servedio et al 2014 |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Uma Ramakrishnan (NCBS, India) | Mutation and selection. Island-continent model and change in alelle freq. Different kinds of selection, w and w_bar; change in allele freq | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Uma Ramakrishnan (NCBS, India) | problem set: HW. Migration/population structure | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Kavita Jain (JNCASR, India) | Adaptation dynamics (Lenski experiment, clonal interference, epistasis) | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Kavita Jain (JNCASR, India) | Discussion of homework problems | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | Uma Ramakrishnan (NCBS, India) | Journal club: Discuss Foerster et al 2007, Rubidge et al 2012, and Barrett et al 2008 |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | Deepa Agashe (NCBS, India) | Genome evolution: codon use, composition, copy number variation, non-coding sequences, epistasis, selfish elements | ||
| 09:30 to 10:45 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | Uma Ramakrishnan (NCBS, India) | Simulations with drift, explore colaescent models and micro-evol processes under coalsecent | ||
| 12:30 to 13:30 | -- | Lunch | ||
| 13:30 to 14:45 | Deepa Agashe (NCBS, India) | Tutorial: designing evolution experiments, model systems | ||
| 14:45 to 15:00 | -- | Short break | ||
| 15:00 to 16:15 | Uma Ramakrishnan (NCBS, India) | problem set with selection | ||
| 16:15 to 16:30 | -- | Tea/coffee break | ||
| 16:30 | -- | Free time |
| Time | Speaker | Title | Resources | |
|---|---|---|---|---|
| 09:30 to 10:45 | -- | Student presentations | ||
| 10:45 to 11:15 | -- | Tea/coffee break | ||
| 11:15 to 12:30 | -- | Student presentations |